Owen D. Solberg, Steven J. Mack *, Alex K. Lancaster, Richard M. Single, Yingssu
Tsai, Alicia Sanchez-Mazas, and Glenys Thomson
Hum Immunol (2008), doi: 10.1016/j.humimm.2008.05.001
* Corresponding author email (remove the numbers and punctuate
appropriately): sjmack321 at chori321 dot org
·
HLA allele frequency maps: A,
C, B, DRB1, DQA1 and
DQB1, DPA1 and DPB1.
·
Index of population datasets.
This index includes:
o
The literature datasets. (With PyPop-formatted data
files for download and links to PubMed.)
o
The AlleleFrequencies.net datasets. (With
PyPop-formatted data files.)
o
The 12th International Histocompatibility Workshop
(IHW) datasets. (Listing only. Data available from http://geneva.unige.ch/IHWdata/.)
o
The 13th IHW datasets. (Listing only. Data
available from dbMHC at http://www.ncbi.nlm.nih.gov/gv/mhc/.)
·
Other miscellaneous files:
o
config-allelecount.ini
PyPop configuration file used in analysis (includes allele-name pre-processing
and binning rules described in material and methods.) Updated, December 29, 2010; details included in the results.zip download.
o
results.zip
The main PyPop output files for our analysis (consolidated for all three meta-datasets). Updated, December 29, 2010; details included in the download.
o
GMTPlotData.sh – shell
script used to plot allele frequency data. Requires
The Generic Mapping Tools. (Data needs to be in this
format.)
o
k-versus-ngametes.pdf
– plot of number of alleles versus sample size for all population samples, by
locus.