PyPop.Meta

Module for collecting multiple population outputs.

Classes

Meta	Aggregates output from multiple population runs.

Functions

translate_string_to_stdout(xslFilename, inString[, ...])
translate_string_to_file(xslFilename, inString, outFile)
translate_file_to_stdout(xslFilename, inFile[, ...])
translate_file_to_file(xslFilename, inFile, outFile[, ...])

Module Contents

translate_string_to_stdout(xslFilename, inString, outputDir=None, params=None)

translate_string_to_file(xslFilename, inString, outFile, outputDir=None, params=None)

translate_file_to_stdout(xslFilename, inFile, inputDir=None, params=None)

translate_file_to_file(xslFilename, inFile, outFile, inputDir=None, outputDir=None, params=None)

class Meta(popmetabinpath=None, datapath=None, metaXSLTDirectory=None, dump_meta=False, TSV_output=True, prefixTSV=None, PHYLIP_output=False, ihwg_output=False, batchsize=0, outputDir=None, xml_files=None)

Aggregates output from multiple population runs.

Transform a specified list of XML output files to *.tsv tab-separated values (TSV) form.

Defaults: # output .tsv tables by default (can be used by R) TSV_output=True

# don’t output PHYLIP by default PHYLIP_output=False

# by default, don’t enable the 13th IHWG format headers ihwg_output = False

# by default process separately (batchsize=0) batchsize = 0